GVS: Genome Variation Server 150

Input Genotype File

(file format for genotype input)

Set up parameters for display and analysis

Data Input
Interpret SNP IDs as Chromosome Positions (NCBI 38/hg38)
Data Output and Display
Output SNPs By
Display SNPs By
Filtering SNPs
Allele Frequency Cutoff (%)
No Monomorphic Sites
Clustering in Graphic Display
Cluster SNPs
Cluster Samples
Selecting Tag SNPs
r2Threshold (0.0-1.0)
Data Coverage (%) for Tag SNPs
Data Coverage (%) for Clustering
Color-Coding For LD Plot
LD Minimum (0.0-1.0)
LD Maximum (0.0-1.0)
Color Scheme

Display Results


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