GVS: Genome Variation Server
Sponsored by
SeattleSNPs
An NHLBI Program for Genomic Applications
About GVS
How to Use GVS
Online Tutorial
Build Notes
Batch GVS
Mouse GVS
Contact Us
Input Genotype File
(file format for genotype input)
Set up parameters for display and analysis
Data Input
Interpret SNP IDs as Chromosome Positions
Data Output and Display
Output SNPs By
SNP ID in File
Display SNPs By
Table/Image
Text
Custom-Text
Filtering SNPs
Allele Frequency Cutoff (%)
No Monomorphic Sites
Clustering in Graphic Display
Cluster SNPs
Cluster Samples
Selecting Tag SNPs
r
2
Threshold (0.0-1.0)
Data Coverage (%) for Tag SNPs
Data Coverage (%) for Clustering
Color-Coding For LD Plot
LD Minimum (0.0-1.0)
LD Maximum (0.0-1.0)
Display Results
National Heart, Lung, and Blood Institute
Programs for Genomic Applications
National Heart, Lung, and Blood Institute
Programs for Genomic Applications