Genome Variation Server

An NHLBI Program for Genomic Applications

Load pga Genes

Select Gene
Select Population For tag SNPs, choice of "All" may invoke the MultiPop-TagSelect algorithm.

Data Output and Display
Output SNPs By		Display SNPs By
Filtering SNPs
Allele Frequency Cutoff (%)		No Monomorphic Sites
Clustering in Graphic Display
Cluster SNPs		Cluster Samples
Selecting Tag SNPs
r²Threshold (0.0-1.0)		Data Coverage (%) for Tag SNPs
		Data Coverage (%) for Clustering
Color-Coding For LD Plot
LD Minimum (0.0-1.0)		LD Maximum (0.0-1.0)
Color Scheme